Assoc. Prof. Muhammet Şakiroğlu
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Bioengineering
4653

Akademik İngilizce

Ders Notu Bioengineering tarih belirtilmemiş
Ders Notu photosynthesis tarih belirtilmemiş
Ders Notu 1-Genetic Engineering tarih belirtilmemiş
Diğer SYLLABUS tarih belirtilmemiş

Genetics, Genetik

Ders Notu Lecture 10 tarih belirtilmemiş
Ders Notu Lecture 6 tarih belirtilmemiş
Ders Notu Lecture9 tarih belirtilmemiş
Ders Notu Lecture 8 tarih belirtilmemiş
Ders Notu Lecture 7 tarih belirtilmemiş
Ödev HW 5 tarih belirtilmemiş
Dönem Projesi HW 4 tarih belirtilmemiş
Ödev HW 3 tarih belirtilmemiş
Ders Notu Mendelian practice problems tarih belirtilmemiş
Ders Notu Lecture 3 tarih belirtilmemiş
Ödev HW-2 tarih belirtilmemiş
Ödev HW1 tarih belirtilmemiş
Ders Notu Lecture 2 tarih belirtilmemiş
Ders Notu Lcture 1 tarih belirtilmemiş
Diğer SYLLABUS tarih belirtilmemiş

İstatistik ve Olasılık

Diğer regresyon çalışma tarih belirtilmemiş
Ders Notu Normal dağılım tarih belirtilmemiş
Ders Notu çalışma verisi tarih belirtilmemiş
Sınav Soru ve Cevapları Vize sorulanın cevabı tarih belirtilmemiş
Ders Notu Varyans hesaplama için örnek tarih belirtilmemiş
Ders Notu 2-Veri türleri tarih belirtilmemiş
Ders Notu 3- İstatisitik parametrelerinin formülleri tarih belirtilmemiş
Diğer verileri tarih belirtilmemiş
Diğer Formüller tarih belirtilmemiş
Ders Notu 1- Genel Giriş tarih belirtilmemiş
Diğer SYLLABUS tarih belirtilmemiş

THESES 
1.    Sakiroglu, M. 2004. Heterosis between Semidormant and Nondormant Derived Alfalfa Germplasm. Iowa State University. MS Thesis, Advisor: E. Charles Brummer
2.    Şakiroğlu, M. 2009.  Population Structure, Genetic Diversity, Phylogenetic Analyses, and Association Mapping of Biofuel Traits in Wild Diploid Alfalfa (Medicago Sativa L.) Accessions. University of Georgia. PhD Dissertation, Advisor: E. Charles Brummer
PEER REVIEWED JOURNAL ARTICLES/PROCEEDINGS
1.    Le Roux, M., E. Phiri,  W. Khan, M. Şakiroğlu, A. Valentine, &  S. Khan. 2014. Expression of novel cytosolic malate dehydrogenases (cMDH) in  Lupinus angustifolius  nodules during phosphorus starvation. Journal of Plant Physiology.171:1609-1618
2.    Şakiroğlu, M. and E.C. Brummer. 2013. Presence of Phylogeographic Structure among Wild Diploid Alfalfa Accessions (Medicago sativa L. subsp. microcarpa Urb.) With Evidence of the Center Of Origin. Genetic Resources and Crop Evolution. 60:23-31
3.    Sakiroglu M. and Mavioglu-Kaya M. 2012. Estimating Genome Size and Determining Ploidy Levels of Wild Tetraploid Alfalfa Accessions (Medicago sativa subsp. varia) Using Flow Cytometry. Turkish J of Field Crops. 17(2):151-156
4.    Şakiroğlu, M., S. Sherman-Broyles, A. Story, M., K.J Moore, J.J. Doyle, and E.C. Brummer. 2012. Patterns of Linkage Disequilibrium and Association Mapping in Diploid Alfalfa (M. sativa L.). Theor. and Appl. Genet. 125:577-590
5.    Şakiroğlu, M., K.J Moore, and E.C. Brummer. 2011. Variation in Biomass Yield, Cell Wall Components, and Agronomic Traits in a Broad Range of Diploid Alfalfa (M. Sativa L.)  Accessions. Crop Sci. 51:1956-1964
6.    Şakiroğlu, M. and E.C. Brummer. 2011. Clarifying the ploidy of some accessions in the USDA alfalfa germplasm collection. Turkish Journal of Botany. 35:509-519
7.    Şakiroğlu, M., J.J. Doyle and E.C. Brummer. 2010. Inferring Population Structure and Genetic Diversity of Broad Range of Wild Diploid Alfalfa (Medicago Sativa L.) Accessions Using SSR Markers.  Theor. and Appl. Genet. 121:403–415
8.    Şakiroğlu, M., J.J. Doyle, and E.C. Brummer. 2009. The population genetic structure of diploid Medicago sativa L. germplasm. In C. Huyghe, ed. XXVIII Meeting of Eucarpia Fodder Crops and Amenity Grasses Section. Springer, Berlin.
9.    Şakiroğlu, M. and E.C. Brummer. 2007. Little Heterosis between Alfalfa Populations Derived from the Midwestern and Southwestern United States. Crop Sci. 47: 2364-2371.

PEER REVIEWED JOURNAL ARTICLES/PROCEEDINGS IN TURKISH
10.    Sakiroglu, M., D. Ilhan,  M. Mavioglu Kaya, O. Demirozogul, O. Uluçay,  and. B.  Eren 2011. Moleküler Veriler Işığında Medicago Sativa L. Tür Kompleksinin Mevcut Durumu. Kafkas University Institute of Natural and Applied Sciences Journal. 4(1):32-42
11.    Şakiroğlu, M. and , E. C. Brummer.  2012. Yonca (Medicago sativa L.) İçin Orijinin Merkezi Kağızman Merkezli Güney Kafkasya. In A. Yüce, Ed: Geçmişten Geleceğe Her Yönüyle Kağızman Sempozyumu. 528-531 
ABSTRACTS
12.    Kang, Y., M. Sakiroglu, M.Y. Wang, J. Stanton-Geddes, Y.C. Lee, N. Young, M.K. Udvardi  (2014) Genome-wide association mapping of drought stress and biomass traits with HapMap SNPs in Medicagotruncatula.  Plant & Animal Genomes XXII Conference. San Diego, CA. 
13.    Ahu Altinkut Uncuoglu, Umut Tuyel, Funda Senturk Akfirat, Yildiz Aydin, Ozge Karakaş Metin, Muhammet Sakiroglu, Metin Tuna, Ilker Nizam, Erdal Kaya.  2014. Genetic Diversity and Association Mapping Studies in Colchicum L. International Conference on Enhanced Genepool Utilization - Capturing Wild Relative and Landrace Diversity for Crop Improvement, Cambridge, United Kingdom, Book of Abstracts p: 110, 16-20 June  
14.    Ezgi Cabuk Sahin, Yildiz Aydin, Muhammet Sakiroglu, Erdal Kaya, Ahu Altinkut Uncuoglu. 2014. LEAFY as a Candidate Gene for Association Mapping in Colchicum L. International Conference on Enhanced Genepool Utilization - Capturing Wild Relative and Landrace Diversity for Crop Improvement, Cambridge, United Kingdom, Book of Abstracts p:111, 16-20 June 
15.    T. Taşcıoğlu, Ö. Karakaş Metin, M. Şakiroğlu, Y. Aydın, K. Akan, Ahu Altinkut Uncuoglu. 2014,  Genetic Diversity, Population Structure, Linkage Disequilibrium and Gene Expression Analyses in Winter Type Turkish and Middle-Eastern Bread Wheat (Triticum aestivum L.) Populations. 2nd International Wheat Stripe Rust Symposium, İzmir, Turkey, April 28-May 1, 
16.    Çabuk Şahin E., Y. Aydın, S.K. Verma, M. Şakiroğlu, E. Kaya, A. Altinkut Uncuoglu. 2013. Identification of Novel Genes Associated with Morphological Characters in Colchicum through a Candidate Gene-based Association Strategy.7th EPSO Conference, Plants for a Greening Economy; 09/2013 Porto Heli, Greece, September 1-4,
17.    Taşçıoğlu T., O. Karakaş, M. Şakiroğlu, S.K. Verma, Y. Aydın, K. Akan, A. Altınkut Uncuoğlu. 2013. Usage of Bioinformatic Tools to Assess Genetic Diversity in Wheat Gene Pool for Yellow Rust Resistance. 7th EPSO Conference, Plants for a Greening Economy; 09/2013. Book p:331, Porto Heli, Greece, September 1-4, 
18.    Tüyel U., S.K. Verma, F.S. Akfırat, M. Şakiroğlu, Y. Aydın, E. Kaya, A.A.Uncuoğlu , Olomouc Biotech 2013. Plant Biotechnology:Green for Good II Bildiri kitapçığında “Determination of Morphological and Molecular Characteristics of Colchicum L. Species in the Flora of Turkey” pp45., Olomouc, Czech Republic 17-21 Haziran 2013 
19.    Aydemir M., S.K. Verma, M. Şakiroğlu, Y. Aydın, E. Kaya, A.A.Uncuoğlu , Olomouc Biotech 2013 Plant Biotechnology:Green for Good II Bildiri kitapçığında “Sequencing of Chloroplast TRN-T-L-F Intron for Phylogenetic Analysis of Colchicum Genus From Flora of Turkey” pp50., Olomouc, Czech Republic 17-21 Haziran 2013
20.    Kang Y., M. Sakiroglu, Y.C. Lee, N. Young, M. Udvardi. 2012. Genome-wide association mapping of drought stress related traits with HapMap SNPs in Medicago truncatula. ASPB Annual Meeting, 20-24 July 2012 Austin, TX
21.    Broyles-Sherman, M. Sakiroglu, S., A. Story, J.J. Doyle, and E.C. Brummer. 2011. Genetic Diversity, Association and Linkage Disequilibrium of Lignin Biosynthesis Candidate Genes in Diploid Alfalfa. Proc. Plant and Animal Genomes XVII Conf. 15-19 Jan 2010. San Diego, CA. P433
22.    Brummer, E. C., M. Monteros, G. D. May, X. Li, Y. Wei, M. Sakiroglu, J. Doyle, and S. Sherman-Broyles.  2010. Genomics to Improve Alfalfa as a Biofuel Feedstock. ASA Annual Meeting. Oct. 31 - Nov. 3, 2010. Long Beach, CA
23.    Havananda, T., M. Sakiroglu, E.C. Brummer.  I.J. Maureira Butler, and J.J. Doyle. 2010. Evolution of the Medicago sativa polyploid complex. Proceedings of Botany Conf. 31 Jul-4 Aug 2010. Providence, RA 
24.    Broyles-Sherman, S., M. Sakiroglu, A. Story, J.J. Doyle, and E.C. Brummer. 2010. 454 Sequencing Of Lignin Biosynthesis Candidate Genes In Alfalfa. Proc. Plant and Animal Genomes XVI Conf. 9-13 Jan 2010. San Diego, CA. P433
25.    Şakiroğlu, M., J.J. Doyle, and E.C. Brummer. 2009. The population genetic structure of diploid Medicago sativa L. germplasm. p. 41. Book of Abstracts. Proc. XXVIII Meeting of Eucarpia Fodder Crops and Amenity Grasses Section. 11-14 May 2009. La Rochelle, France. 
26.    Şakiroğlu, M., J.J. Doyle, and E.C. Brummer. 2009. Assessing population genetic structure of diploid alfalfa germplasm as a prelude to association mapping. Genomics: GTL Contractor-Grantee Workshop VII USDA-DOE Plant Feedstock Genomics for Bioenergy Awardee Workshop 2009. North Bethesda, MD, 8-11 February 2009. http://www.orau.gov/gtl2009/abstracts/Brummer_Edward.pdf
27.    Şakiroğlu M., E.C Brummer, and J.J. Doyle. 2009. Patterns Of Genetic Diversity And Population Structure In Broad Range Of Wild Diploid Alfalfa (Medicago Sativa L.)Accessions. Proc. Plant and Animal Genomes XVII Conf. 10-14 Jan 2009. San Diego, CA. P379. http://www.intl-pag.org/17/abstracts/P05f_PAGXVII_379.html
28.    Şakiroğlu M., J. Doyle, and E.C. Brummer. 2008. Revealing Genetic Relationships and the Scope of Diversity among Unimproved Diploid Alfalfa Germplasm Using SSR Markers. Proc. 41st North American Alfalfa Improvement Conf., June 4-8, 2008 Dallas,TX http://www.naaic.org/Meetings/National/2008meeting/proceedings/Sakiroglu.pdf.
29.    Şakiroğlu M. and E.C. Brummer. 2008. Population Structure, Genetic Diversity And Phylogenetic Relationships In Diploid Medicago sativa L. Proc. Plant and Animal Genomes XVI Conf. 12-16 Jan 2008. San Diego, CA. P136 http://www.intl-pag.org/pag/16/abstracts/PAG16_P03b_136.html.
30.    Brummer. E.C., M. Şakiroğlu, Y. Wei, and J.J. Doyle. 2008. Using Association Mapping to Identify Markers for Cell Wall Constituents and Biomass Yield in Alfalfa. Proc. Plant and Animal Genomes XVI Conf. 12-16 Jan 2008. San Diego, CA. W367. http://www.intl-pag.org/pag/16/abstracts/PAG16_W52_367.html. 
31.    Şakiroğlu, M. and E.C. Brummer. 2007. Genetic Mapping of Bioenergy Traits in Alfalfa (Medicago sativa). Georgia Graduate Student Interdisciplinary Conference. March 23-24 2007. 
32.    Şakiroğlu, M and E.C. Brummer. 2006. Testing Combining Abilities of diverse Alfalfa Populations. Proc. 40th North American Alfalfa Improvement Conf., July 16-19, 2006 Bloomington, MN 
33.    Şakiroğlu, M. and E.C. Brummer. 2004. Heterosis Between Semidormant and Winterhardy Nondormant-Derived Alfalfa Germplasm. ASA-CSSA-SSSA 2004 Annual Meetings. Oct. 31-Nov. 4, 2004. Seattle, WA. Agron Abstr., ASA, Madison, WI. 
ABSTRACTS IN TURKISH
34.    Mavioglu-Kaya M. and M. Sakiroglu. 2012. M. sativa subsp. xvaria Popülasyonlarının Ploidi Düzeyinin Flov Sitometri Metodu İle Belirlenmesi. Ulusal Biyoloji Kongresi 3-7 Eylül 2012, İzmir
35.    Şakiroğlu, M. and E.C. Brummer. 2012. Genetic Isolation by Distance in M. sativa subsp. caerulea: Biogeography and the Evidence for the Center of Origin. Ulusal Biyoloji Kongresi 3-7 Eylül 2012, İzmir
36.    Şakiroğlu, M. 2012. Moleküler Araçların Tür Komplekslerinin Analizinde Kullanılması:  Medicago sativa-falcata Tür Kompleksi Örneği. Ulusal Moleküler Biyoloji ve Biyoteknoloji Kongresi, 15-18 Kasım 2012, Antalya 

POPULAR SCIENCE &POLICY REPORTS
37.    Şakiroğlu, M. 2011. Somalideki Kıtlık Felaketi. [The Hunger Problem in Somalia]. Seta Analiz No:47. In Turkish (http://newsletter.setav.org/tr/Posta/analiz-somalideki-kitlik-felaketi-muhammet-sakiroglu.aspx)
38.    Şakiroğlu, M. 2011. Bitki Genetik Kaynaklarının Uluslararası Paylaşım Sorunu. [The international ‘problem’ of Plant Genetic Resources]. Seta Analiz No:14. In Turkish (http://www.setav.org/Ups/dosya/44747.pdf)
39.    Şakiroğlu, M. 2010. Fırsatlar ve Korkular Arasında GDO’lar. [GMOs, in Between Fear and Opportunities] Seta Analiz No:14. In Turkish
 (http://www.setav.org/document/SETA_Analiz_Firsatlar_ve_Korkular_Arasinda_GDOlar.pdf)
40.    Şakiroğlu, M. 2010. Fayda ve Riskler Arasında GDO’lar. [Risks and Benefits of GM Crops] Anlayış Dergisi Sayı:81, Feb 2010. In Turkish
41.    Şakiroğlu, M. 2009. Sürdürülebilir Bir Enerji Kaynağı Olarak Bitkisel Biyoyakıtlar [Biofuels as an Alternative Energy Source]. Haber 10. (http://www.haber10.com/makale/16549/). In Turkish 
42.    Şakiroğlu, M. 2007. Genetik Teknojilerini Doğru Tartışmak [Appropriate Framework for Discussing Genetic Technologies], Bilim ve Ütopya Dergisi. Haziran 2007: Sayı 156. In Turkish.

BS Biology, Harran University/Turkey 1996-2000
MS

Plant Breeding, Iowa State University, 2004 

PhD

Plant Breeding, Genetics, and Genomics University of Georgia, 2009

Asst. Prof. Kafkas University, Kars Turkey 2009-2014
Assoc. Prof. Kafkas University, Kars Turkey 2014-present
  • msakiroglu@gmail.com
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